PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g77830
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family LSD
Protein Properties Length: 173aa    MW: 18182.6 Da    PI: 8.3222
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g77830genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD141.91.6e-132953125
     zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                C+gCr+lL YP GA+sV+Ca+C++V
  CA00g77830 29 CSGCRNLLLYPVGATSVCCAVCNAV 53
                ************************9 PP

2zf-LSD146.46.3e-156892125
     zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                CggC+tlL+Y rGA+sV+C++C+tV
  CA00g77830 68 CGGCHTLLMYIRGATSVQCSCCHTV 92
                ************************9 PP

3zf-LSD141.52.2e-13123147125
     zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                 Cg+Cr lL+Y +GA+sV+Ca+C++V
  CA00g77830 123 CGNCRMLLMYQYGARSVKCAVCNFV 147
                 ***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.3E-122656IPR005735Zinc finger, LSD1-type
PfamPF069431.8E-102953IPR005735Zinc finger, LSD1-type
SuperFamilySSF486957.67E-629144IPR011031Multihaem cytochrome
TIGRFAMsTIGR010531.2E-146594IPR005735Zinc finger, LSD1-type
PfamPF069431.7E-126892IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010535.2E-12120150IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-12123147IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MPVPLAPYPT PPTPFTPPAN AGSQSQLVCS GCRNLLLYPV GATSVCCAVC NAVTAVPPPG  60
TEMAQLVCGG CHTLLMYIRG ATSVQCSCCH TVNLAMEGKY ISLLVKVRIN DIVTANQVAH  120
VNCGNCRMLL MYQYGARSVK CAVCNFVTSV GVSIKSSLVL SLQSFMLQSM MN*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754473e-85HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281099.13e-82PREDICTED: protein LOL1
RefseqXP_010663767.13e-82PREDICTED: protein LOL1
RefseqXP_010663770.13e-82PREDICTED: protein LOL1
RefseqXP_010663773.13e-82PREDICTED: protein LOL1
RefseqXP_010663776.13e-82PREDICTED: protein LOL1
RefseqXP_010663781.13e-82PREDICTED: protein LOL1
SwissprotQ93ZB13e-73LOL1_ARATH; Protein LOL1
TrEMBLM1BH582e-85M1BH58_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000451434e-85(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16792467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.35e-59lsd one like 1